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Acquire the DVUploader from here a Github release here
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Set up metadata and such on Dataverse, then submit/save your dataset without adding files. We will add files below. First, though, we need a doi. Submitting/saving will make a doi.
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Acquire your API key (upper right under your account picture in Dataverse).
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Use, the following command to upload:
java -jar DVUploader-v1.0.5.jar -recurse -server=https://dataverse.harvard.edu -did=doi:10.7910/XXX/5XXXYN -key=72341abe-634c-424a-ac33-ca234cef23ab directory_with_files